If I was buying new, I'd definitely get black. My chrome header turns blue or brown near the engine. I have a product that removes it, with a lot of elbo grease, but in 200 miles or so, it comes back. I'd get a black header, with a chrome muffler.
After owning the supertrapp for a few years now, I would prefer to have a chrome system....and the reason is maintenance.
While the chrome systems turns blue and needs to be cleaned, the black pipe is either going to be coated with heat treated paint or powder coated. Both of which I have used on my supertrapp header...and both have not held up to the heat an road debris.
I have had my pipes off more then I can count to be painted and touched up and to be honest, its a pain in the a$$.
I've owned chrome MAC exhausts on other bikes and its the way to go for lowest maintenance.